Write everything down
Every variation — owner-requested or builder-requested — should be confirmed in writing with cost and time impact before the work happens.
Why builders dislike informal changes
An undocumented variation becomes a payment argument later. Builders who insist on written variation orders are usually the better ones to work with.
Owner-side discipline
Decide and stick to it. The biggest budget overruns come from the homeowner changing their mind on tiles, kitchens and lighting after first fix.